Underlying stats for correlation heatmap exploring which morphologies describe the PCs

This function is complementary to the 'pcfeaturecorrelations' function. 'pcfeaturecorrelations_stats' outputs a dataframe containing the correlation and pvalues related to your pcfeaturecorrelations heatmap.

Usage

pcfeaturecorrelations_stats(
  pca_data,
  pc.start,
  pc.end,
  feature.start,
  feature.end,
  rthresh,
  pthresh
)

Arguments

pc.start

is first PC you want included in analysis (e.g., PC1)

pc.end

is last PC you want included in analysis (e.g., PC4)

feature.start

is first column number of morphology measures

feature.end

is last column number of morphology measures

rthresh

is cutoff threshold for significant correlation values

pthresh

is cutoff threshold for significant p-values

data

is your input data frame